Publications

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Thesis
Jayaraj, PB.  2016.  GPU BASED VIRTUAL SCREENING TECHNIQUES FOR FASTER DRUG DISCOVERY. , Calicut, Kerala, India: NIT Calicut
Journal Article
Antony, J. V., MYJPHPB.  2021.  Assigning secondary structure in proteins using AI. Journal of Molecular Modeling. 27(9):1-13.
Jayaraj, PB, Mohan S.  2014.  Cell Charge Approximation for Accelerating Molecular Simulation on CUDA-Enabled GPU. International Journal of Computer-Aided Technologies (IJCAx). 1(1):9-20.shyam_paper.pdf
MB, B, Jayaraj PB.  2022.  Cervix type detection using a self‐supervision boosted object detection technique. International Journal of Imaging Systems and Technology. :1-10.
B, JP, et al.  2023.  Deep Cleaner-A Few Shot Image Dataset Cleaner using Supervised Contrastive Learning. IEEE Access . 11:18727-18738..
Viswajit Vinod Nair, Jayaraj, et al.  2022.  Deep Sequence Models for Ligand-Based Virtual Screening. Journal of Computational Biophysics and Chemistry. :1-12.
B, JP.  2023.  An efficient spectral partitioning based static application mapping algorithm for 2D mesh NoCs. Concurr. Comput. Pract. Exp. . 35(26):e7838..
A, JV, B JP.  2022.  An End-to-End Deep Learning Pipeline for Assigning Secondary Structure in Proteins. Journal of Computational Biophysics and Chemistry . :1-14.
SUNNY, Sharon; JAYARAJ, PB.  2021.  FPDock: Protein–protein docking using flower pollination algorithm . Computational Biology and Chemistry. 93:107518.
Sunny, S, B JP.  2021.  A Geometric Complementarity-Based Tool for Protein–Protein Docking.. " Journal of Computational Biophysics and Chemistry . :2250003.
P. B Jayaraj, K Mithun, GJUCG.  2020.  A GPU based Virtual Screening Tool Using SOM. International Journal of Computational Biology and Drug Design (IJCBDD), Indersciene.
B, JP, mathias A, Nufail M, Gopakumar G, Jaleel UC.  2016.  GPURFSCREEN: A GPU based virtual screening tool using Random Forest Classifier. Journal of Cheminformatics . 8(12):1-13.gpurfscreen_published_copy.pdf
Jayaraj, PB, et al.  2022.  Ligand Based Virtual Screening Using Self-organizing Maps. The Protein Journal. :1-11.
Samyak, J&.  2019.  Ligand based Virtual Screening using SVM on GPU. Computational Biology and Chemistry, Elsevier. 83(83):107142.
B, JP.  2024.  Prior-guided generative adversarial network for mammogram synthesis.. Biomed. Signal Process. Control. 87:105456.
JISNA, JAYARAJVA; PB.  2021.  Protein structure prediction: conventional and deep learning perspectives. The Protein Journal. 40(4):522-544.
Sunny, S., JPB.  2021.  Protein–Protein Docking: Past, Present, and Future. The protein journal. :1-26.
Francis, S, B JP.  2022.  ThoraxNet: a 3D U-Net based two-stage framework for OAR segmentation on thoracic CT images. Physical and Engineering Sciences inMedicine. :1-15.
B, JP.  2023.  Using Attention-UNet Models to Predict Protein Contact Maps. J. Comput. Biol. . 31(7):691-702.
Conference Proceedings
Jayaraj, et al.  2020.  Towards Protein Tertiary Structure Prediction using LSTM/BLSTM), Oct 14. in Fourth International Conference on Computing and Network Communications (CoCoNet'20), India . , Vellure, India: Springer
Conference Paper
B, JP, K R, G G.  2016.  A Data parallel maximum common subgraph algorithm for Drug discovery applications, 23 MAY. IPDPS 2016. , Hyatt Hotel, Chicago, USAIPDPS 2016.pdf
Jayaraj, PB, Lijin C.  2014.  Design and Implementation of a New CPU Governor - Power Aware Governor, 16 July . International Conference on Advances in Computing, Communication and Information Science (ACCIS-’14), TKMCE. , kollam, Kerala, Indiapower-aware_governor.pdf
M. B Bijoy, J& PB, et al.  2019.  Detecting Cervix Type Using Deep Learning and GPU, Dec 9. 6th IEEE Region 10 Humanitarian Technology Conference 2018. , SriLanka
Avinash kumar, J& PB, et al.  2018.  Early Detection of breast cancer using SVM with SMO algorithm, December 22. 3rd International Conference on Advanced Computing and Intelligent Engineering, Springer. , Bubhaneswar, India